List of known pesticidal protein structures


Links to structures in the PDB are given where:

  • The structure corresponds to a BPPRC sequence entry. Note, where two BPPRC entries represent identical amino acid sequences (e.g. App6Aa1 and App6Aa2), the structure PDB entry will be associated with both (regardless of which quaternary rank was described in any associated publication).

  • The structure corresponds to a mutant of a BPPRC sequence entry where a small number of mutations have been included to aid crystallisation and/or to elucidate function.

  • The structure represents either a full length or an activated form of the toxin (the structure may not represent the full-length sequence in the BPPRC database entry).

NOTE: Users are advised to check the correspondence between the PDB entry sequence and the BPPRC sequence (e.g. using both the BPPRC best match finder needle and blast alignments) and should take care in the interpretation of the data.

Name Old Name Accession PDBID Modified Comment Year DOI
App1Ba1 XaxA CBJ91797.1 6GY6 No In complex with App2Ba1 (XaxB)
2018 10.7554/eLife.38017
App1Ba1 XaxA CBJ91797.1 6GY8 No
2018 10.7554/eLife.38017
App1Ca1 YaxA 6EK7_A 6EK7 No
2018 10.1038/s41467-018-04139-2
App1Ca1 YaxA 6EK7_A 6EL1 Pore form in complex with App3Aa1 (YaxB)
2018 10.1038/s41467-018-04139-2
App2Aa1 PaxB WP_046395991 6EK4 No
2018 10.1038/s41467-018-04139-2
App2Ba1 XaxB CBJ91798.1 6GY7 No
2018 10.7554/eLife.38017
App2Ba1 XaxB CBJ91798.1 6GY6 No In Complex with App1Ba1 (XaxA)
2018 10.7554/eLife.38017
App3Aa1 YaxB WP_011816274 6EL1 Pore form in complex with App1Ca1 (YaxA)
2018 10.1038/s41467-018-04139-2
App6Aa1 Cry6Aa1 AAA22357 5KUD No
2016 10.1186/s12915-016-0295-9
App6Aa1 Cry6Aa1 AAA22357 5KUC No Trypsin activated
2016 10.1186/s12915-016-0295-9
App6Aa1 Cry6Aa1 AAA22357 5GHE No Activated, major chain
2016 10.1016/j.bbrc.2016.07.002
App6Aa2 Cry6Aa2 AAM46849 5GHE No Activated, major chain
2016 10.1016/j.bbrc.2016.07.002
App6Aa2 Cry6Aa2 AAM46849 5KUC No Trypsin activated
2016 10.1186/s12915-016-0295-9
App6Aa2 Cry6Aa2 AAM46849 5KUD No
2016 10.1186/s12915-016-0295-9
Cry11Aa None None not available
2022 10.1101/2021.12.15.472578
Cry11Ba1 None CAA60504 pending
2022 10.1101/2021.12.15.472578
Cry1Aa6 CryIA(a) AAA86265 1CIY
1997 10.1006/jmbi.1995.0630
Cry1Ac4 Cry1Ac4 AAA73077 4W8J Yes Full-length (133 kDa) protoxin: 14x Cys-Ser and F462V mutant of Cry1Ac4
2014 10.1002/pro.2536
Cry1Ac7 Cry1Ac7 AAB46989 4ARX No
2013 10.1107/s090744490101040x
Cry1Ac7 Cry1Ac7 AAB46989 4ARY No Bound to GalNAc
2013 10.1107/s090744490101040x
Cry1Ac8 Cry1Ac8 AAC44841 4ARX No
2013 10.1107/s090744490101040x
Cry1Ac8 Cry1Ac8 AAC44841 4ARY No Bound to GalNAc
2013 10.1107/s090744490101040x
Cry1Da1 Cry1Da1 CAA38099 6OVB Yes V108C, E128C, S282V, Y316S, I368P mutant of Cry1Da1
2019 10.1128/AEM.00579-19
Cry2Aa1 Cry2Aa1 AAA22335 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa10 Cry2Aa10 AF433645 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa19 Cry2Aa19 AYN72228 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa2 Cry2Aa2 AAA83516 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa20 Cry2Aa20 AYN72229 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa21 Cry2Aa21 AYN72230 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry2Aa9 Cry2Aa9 AAO13750 1I5P No
2001 10.1016/s0969-2126(01)00601-3
Cry3Aa12 Cry3Aa12 ABY49136 1DLC No
1994 10.1038/353815a0
Cry3Aa12 Cry3Aa12 ABY49136 4QX0,
4QX1,
4QX2,
4QX3,
No
2014 10.1073/pnas.1413456111
Cry3Aa12 Cry3Aa12 ABY49136 6LFP No Co-crystalised in vivo with an entrapped recombinant lipase
2020 10.1021/jacs.9b13462
Cry3Aa12 Cry3Aa12 ABY49136 7EAR Yes Positive charged mutant with multiple mutations (N391K, N395K, E423K, Q430K, D432K, E433K, T436K, T461K, D462K, E463K, E466K)
2021 10.1016/j.biomaterials.2021.120759
Cry3Aa2 Cry3Aa2 AAA22541 7EAR Yes Positive charged mutant with multiple mutations (N391K, N395K, E423K, Q430K, D432K, E433K, T436K, T461K, D462K, E463K, E466K)
2021 10.1016/j.biomaterials.2021.120759
Cry3Aa2 Cry3Aa2 AAA22541 1DLC No
1994 10.1038/353815a0
Cry3Aa2 Cry3Aa2 AAA22541 4QX0,
4QX1,
4QX2,
4QX3,
No
2014 10.1073/pnas.1413456111
Cry3Aa2 Cry3Aa2 AAA22541 6LFP No Co-crystalised in vivo with an entrapped recombinant lipase
2020 10.1021/jacs.9b13462
Cry3Aa3 Cry3Aa3 CAA68482 1DLC No
1994 10.1038/353815a0
Cry3Aa3 Cry3Aa3 CAA68482 4QX0,
4QX1,
4QX2,
4QX3,
No
2014 10.1073/pnas.1413456111
Cry3Aa3 Cry3Aa3 CAA68482 7EAR Yes Positive charged mutant with multiple mutations (N391K, N395K, E423K, Q430K, D432K, E433K, T436K, T461K, D462K, E463K, E466K)
2021 10.1016/j.biomaterials.2021.120759
Cry3Aa3 Cry3Aa3 CAA68482 6LFP No Co-crystalised in vivo with an entrapped recombinant lipase
2020 10.1021/jacs.9b13462
Cry3Aa5 Cry3Aa5 AAA50255 1DLC No
1994 10.1038/353815a0
Cry3Aa5 Cry3Aa5 AAA50255 4QX0,
4QX1,
4QX2,
4QX3,
No
2014 10.1073/pnas.1413456111
Cry3Aa5 Cry3Aa5 AAA50255 6LFP No Co-crystalised in vivo with an entrapped recombinant lipase
2020 10.1021/jacs.9b13462
Cry3Aa5 Cry3Aa5 AAA50255 7EAR Yes Positive charged mutant with multiple mutations (N391K, N395K, E423K, Q430K, D432K, E433K, T436K, T461K, D462K, E463K, E466K)
2021 10.1016/j.biomaterials.2021.120759
Cry3Aa6 Cry3Aa6 AAC43266 6LFP No Co-crystalised in vivo with an entrapped recombinant lipase
2020 10.1021/jacs.9b13462
Cry3Aa6 Cry3Aa6 AAC43266 1DLC No
1994 10.1038/353815a0
Cry3Aa6 Cry3Aa6 AAC43266 4QX0,
4QX1,
4QX2,
4QX3,
No
2014 10.1073/pnas.1413456111
Cry3Aa6 Cry3Aa6 AAC43266 7EAR Yes Positive charged mutant with multiple mutations (N391K, N395K, E423K, Q430K, D432K, E433K, T436K, T461K, D462K, E463K, E466K)
2021 10.1016/j.biomaterials.2021.120759
Cry3Bb1 Cry3Bb1 AAA22334 1JI6 No
2001 10.1107/s0907444901008186
Cry4Aa1 Cry4Aa1 CAA68485 2C9K No
2006 10.1128/JB.188.9.3391-3401.2006
Cry4Ba1 Cry4Ba1 CAA30312 1W99 No
2005 10.1016/j.jmb.2005.02.013
Cry4Ba1 Cry4Ba1 CAA30312 4MOA Yes R203Q mutant
2014 10.1074/jbc.M114.627554
Cry5Ba1 Cry5Ba1 AAA68598 4D8M No
2012 10.1021/bi301386q
Cry7Ca1 Cry7Ca1 ABR67863 5ZI1 Yes
2018 10.1002/pro.3561
Cry8Ea1 Cry8Ea1 AY329081 3EB7 No
2008 10.1016/j.jsb.2009.07.004
Cry chimera None 6OWK_A 6OWK Yes Chimeric protein (named "Cry1B tryptic core variant" in publication)
2019 10.1128/AEM.00579-19
Cry Chimera None 6DJ4_A 6DJ4 Yes Chimera of Cry1Ab, 1Ac, 1F: does not associate with a single database entry. Described as Cry1A.105
2018 10.1016/j.yrtph.2018.09.003
Cry variant None 6WPC_A 6WPC Yes Non-natural Cry variant named Cry1A.2, tryptic core
2021 Unpublished
Cyt1Aa1 Cyt1Aa1 CAA26943 3RON No
2011 10.1016/j.jmb.2011.09.021
Cyt1Aa1 Cyt1Aa1 CAA26943 6T1C Yes Cys7Ser mutant
2020 10.1038/s41467-020-14894-w
Cyt1Aa1 Cyt1Aa1 CAA26943 6T19 No
2020 10.1038/s41467-020-14894-w
Cyt1Aa1 Cyt1Aa1 CAA26943 6T1A No pH10
2020 10.1038/s41467-020-14894-w
Cyt1Aa1 Cyt1Aa1 CAA26943 6T14 No pH7
2020 10.1038/s41467-020-14894-w
Cyt1Aa2 Cyt1Aa2 CAA27868 6T1A No pH10
2020 10.1038/s41467-020-14894-w
Cyt1Aa2 Cyt1Aa2 CAA27868 6T1C Yes Cys7Ser mutant
2020 10.1038/s41467-020-14894-w
Cyt1Aa2 Cyt1Aa2 CAA27868 6T14 Yes pH7
2020 10.1038/s41467-020-14894-w
Cyt1Aa2 Cyt1Aa2 CAA27868 3RON No
2011 10.1016/j.jmb.2011.09.021
Cyt1Aa2 Cyt1Aa2 CAA27868 6T19 No
2020 10.1038/s41467-020-14894-w
Cyt1Aa5 Cyt1Aa5 CAD30079 6T14 Yes pH7
2020 10.1038/s41467-020-14894-w
Cyt1Aa5 Cyt1Aa5 CAD30079 3RON No
2011 10.1016/j.jmb.2011.09.021
Cyt1Aa5 Cyt1Aa5 CAD30079 6T19 No
2020 10.1038/s41467-020-14894-w
Cyt1Aa5 Cyt1Aa5 CAD30079 6T1A No pH10
2020 10.1038/s41467-020-14894-w
Cyt1Aa5 Cyt1Aa5 CAD30079 6T1C Yes Cys7Ser mutant
2020 10.1038/s41467-020-14894-w
Cyt2Aa1 Cyt2Aa1 CAA78519 1CBY No
1996 10.1006/jmbi.1996.0152
Cyt2Aa2 Cyt2Aa2 CAA78519 1CBY No
1996 10.1006/jmbi.1996.0152
Cyt2Aa4 Cyt2Aa4 AAM09651 1CBY No
1996 10.1006/jmbi.1996.0152
Cyt2Ba10 Cyt2Ba10 ACX54358 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba11 Cyt2Ba11 ACX54359 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba12 Cyt2Ba12 ACX54360 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba13 Cyt2Ba13 ACI42304 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba14 Cyt2Ba14 ACI42305 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba15 Cyt2Ba15 AEL29854 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba7 Cyt2Ba7 AAF37222 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt2Ba9 Cyt2Ba9 CAD30094 2RCI No
2008 10.1016/j.jmb.2011.09.021
Cyt5Aa1 Cyt5Aa1 WP_013316150 2MLW No
2015 10.1038/srep08791
Gpp34Ab1 Cry34Ab1 AAG41671 4JOX No
2013 10.1371/journal.pone.0112555
Mpf1Aa1 PluMACPF 2QP2_A 2QP2 No
2007 10.1126/science.1144706
Mpf3Aa1 GNIP1Aa AML23188 6FBM No
2019 10.1073/pnas.1815547116
Mpp23Aa1 Cry23Aa1 AAF76375 4RHZ No Co-crystalised with Xpp37Aa1
2014 Unpublished
Mpp45Aa1 Cry45Aa1 BAD22577 2D42 No
2006 10.1002/prot.20843
Mpp46Aa1 Cry46Aa1 BAC79010 2ZTB No
2009 10.1016/j.jmb.2008.12.002
Mpp51Aa1 Cry51Aa1 ABI14444 4PKM No
2015 10.1016/j.bbrc.2015.04.068
Mpp51Aa2 Cry51Aa2 BAD22577 5HD2 No
2016 10.1038/ncomms12213
Mpp75Aa1 Cry75Aa1 ASY04853 7ML9
2021 10.1371/journal.pone.0258052
Mtx1Aa1 Mtx1 AAA22601 2CB4 Yes Catalytic domain E195Q mutant
2006 10.1016/j.jmb.2006.01.025
Mtx1Aa1 Mtx1 AAA22601 2VSA No
2008 10.1016/j.jmb.2008.05.067
Mtx1Aa1 Mtx1 AAA22601 2CB6 Yes Catalytic domain E195Q mutant
2006 10.1016/j.jmb.2006.01.025
Mtx1Aa1 Mtx1 AAA22601 2VSE No
2008 10.1016/j.jmb.2008.05.067
Pra2Aa1 PirA 3X0T_A 3X0T No
2015 10.1073/pnas.1503129112
Prb2Aa1 PirB 3X0U_A 3X0U No
2015 10.1073/pnas.1503129112
Tpp1Aa2 BinA2 WP_012291791 5FOZ No Natural co-crystal with Tpp2Aa2, pH10
2016 10.1038/nature19825
Tpp1Aa2 BinA2 WP_012291791 5G37 No Natural co-crystal with Tpp2Aa2, pH5
2016 10.1038/nature19825
Tpp1Aa2 BinA2 WP_012291791 5FOY No Natural co-crystal with Tpp2Aa2, pH7
2016 10.1038/nature19825
Tpp2Aa2 BinB2 WP_012291792 5FOZ No Natural co-crystal with Tpp1Aa2, pH10
2016 10.1038/nature19825
Tpp2Aa2 BinB2 WP_012291792 5FOY No Natural co-crystal with Tpp1Aa2, pH7
2016 10.1038/nature19825
Tpp2Aa2 BinB2 WP_012291792 5G37 No Natural co-crystal with Tpp1Aa2, pH5
2016 10.1038/nature19825
Tpp2Aa3 BinB3 WP_036216621 3WA1 No
2014 10.1002/prot.24636
Tpp35Ab1 Cry35Ab1 AAG41672 4JP0 No
2014 10.1371/journal.pone.0112555
Tpp49Aa1 Cry49Aa1 CAH56541 7QA1 No XFEL structure of natural crystals
2021 10.1073/pnas.2203241120
Vip3Aa10 Vip3Aa11 AAR36859 6VLS No Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070438
Vip3Aa11 Vip3Aa11 AAR36859 6VLS No Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070438
Vip3Aa12 Vip3Aa11 AAR36860 6VLS No Trypsin activated fragment: truncated, non-active
2021 10.3390/toxins12070439
Vip3Aa15 Vip3Aa11 AAR36861 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070440
Vip3Aa16 Vip3Aa16 AAW65132 6TFK No trypsin activated
2020 10.1038/s41467-020-17758-5
Vip3Aa16 Vip3Aa16 AAW65132 6TFJ No
2020 10.1038/s41467-020-17758-5
Vip3Aa21 Vip3Aa11 AAR36862 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070441
Vip3Aa33 Vip3Aa11 AAR36863 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070442
Vip3Aa34 Vip3Aa11 AAR36864 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070443
Vip3Aa36 Vip3Aa11 AAR36865 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070444
Vip3Aa37 Vip3Aa11 AAR36866 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070445
Vip3Aa43 Vip3Aa11 AAR36867 6VLS Trypsin activated fragment: truncated, non-active
2020 10.3390/toxins12070446
Vip3Bc1 Vip3Bc1 ATD53733 7NTX No Trypsin activated
2020 10.1038/s41467-021-23146-4
Vip3Bc1 Vip3Bc1 ATD53733 6YRF No Trypsin activated (residues at tip of pore region constructed by homology modelling)
2020 10.1038/s41467-021-23146-4
Vip3Bc1 Vip3Bc1 ATD53733 6V1V Yes Multiple mutant form
2019 10.1002/pro.3803
Vip3Bc1 Vip3Bc1 ATD53733 6YRF No
2020 10.1038/s41467-021-23146-4
Vip3Bc2 Vip3Bc2 ATD53733 6YRF No
2020 10.1038/s41467-021-23146-4
Vip3Bc2 Vip3Bc2 ATD53733 7NTX No Trypsin activated
2020 10.1038/s41467-021-23146-4
Vip3Bc2 Vip3Bc2 ATD53733 6V1V Yes Multiple mutant form
2019 10.1002/pro.3803
Vip3Bc2 Vip3Bc2 ATD53733 6YRF No Trypsin activated (residues at tip of pore region constructed by homology modelling)
2020 10.1038/s41467-021-23146-4
Vpa2Aa3 Vip2Aa3 AEH05931 1QS2 No With bound NAD
1999 10.1038/13300
Vpa2Aa3 Vip2Aa3 AEH05931 1QS1 No
1999 10.1038/13300
Vpb1Ac1 Vip1Ac1 AEH05932 6SMS No
2021 Unpublished
Vpb4Da1 Vip4Da1 AZJ95709 7MJR Yes Q530Y-E531Y-K532Y mutant
2021 10.1371/journal.pone.0260532
Vpb4Da2 Vip4Da2 AZJ95709 7MJR Yes Q530Y-E531Y-K532Y mutant
2021 10.1371/journal.pone.0260532
Xpp37Aa1 Cry37Aa1 AAF76376 4RHZ No Co-crystalised with Mpp23Aa1
2015 Unpublished